metaPocket is a meta server to identify pockets on protein surface to predict ligand-binding sites!

Input methods:

Help

1. A user may upload his/her own pdbfile
   
2. A user may enter a PDB code and chain ID
   
3. A user may adjust the parameters
   

Upload a PDB file

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      PDB file :

Or enter a PDB ID:

Help

      PDB ID:  (For example 1acb)
      Chain ID:     (For example E, I)
      ( If no chain ID is given, the whole structure is considered. Separate multiple chain IDs by commas.)

Set up the parameters:

Help

      How many pockets do you want?  
      Radius of the probe to get potential binding sites:   Angstrom.

  

Note:
Before using metaPocket, please read our terms and conditions.
It may take up to a couple of minutes to find pockets depending on the size of your protein! Please be patient.
The algorithm of metaPocket is illustrated here.

Reference:

If you find this server useful for your work, please cite: Bingding Huang (2009), metaPocket: a meta approach to improve protein ligand binding site prediction , Omics, 13(4), 325-330 Link, PDF.

Contact:

Bingding Huang, Email: bdhuang@gmail.com

Ackowledgement:

Funding from EML research gGmbH and KTS foundation is acknowledged!   Imprint    
you are the 2770th visitor since 16th, April, 2009.

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Copyright 2009 by EML Research and Bingding Huang. All rights reserved.
Last update: 21th, October, 2009